Thaw spinach and wring out all the excess liquid--wring it out really really well so you don't end up with watered down filling.Add the spinach to a mixing bowl with 1 1/2 cups mozzarella, parmesan, cottage cheese, lightly beaten egg, garlic and seasoning. Stir will to combine and set aside while you prepare the shells and meat.
Boil the water for the pasta and cook the shells until just under al dente, about 1 minute less than al dente instructions. Drain and rinse with cool water to stop from cooking. Very lightly toss in olive oil and place in an even layer on a parchment paper lined baking sheet for best results.
While the shells cook, heat a large skillet to medium-high heat. Add a drizzle of olive oil and heat. Once glistening, add the onion and sauté until they become slightly translucent.
Add the ground beef to the skillet and break into pieces. Cook until no longer pink inside, about 7-10 minutes. Drain excess grease and set aside to cool a briefly. Add half of the slightly cooled meat to the cheese and spinach stuffing mixture and stir to combine. (The other half of the meat will be added to marinara in step 6)
Preheat oven to 350°F at this time unless planning to bake at a later time.
Pour 1 1/2 cups of marinara into the bottom of a lightly sprayed 9x13 inch baking pan. Spread it so that it covers the entire bottom of the pan.
Add the remaining cooked beef and onion mixture to the rest of the marinara to make a meat sauce for topping. Stuff each cooked jumbo shell with about 2 1/2 - 3 Tablespoons of cheese and meat mixture. Place open side up in the pan lining them up in one even layer.
When all shells are stuffed, pour the marinara and meat mixture over top of the shells to cover. Sprinkle with 1 1/2 cups of shredded mozzarella (or as much as your heart desires!) and cover with foil.
Bake for about 25-30 minutes covered or until bubbling. Remove foil and bake another 10 minutes until the cheese on top is melted and starting to become slightly golden. Sprinkle freshly chopped basil over top. Cool for about 5-10 minutes before serving.